A Practical Guide to Using Glycomics Databases by Kiyoko F. Aoki-Kinoshita

By Kiyoko F. Aoki-Kinoshita

This e-book offers glycoscientists with a instruction manual of priceless databases that may be utilized to glycoscience examine. even supposing many databases at the moment are publicly to be had, one of many hurdles for his or her clients is the educational curve required to successfully make the most of these databases. for that reason, this e-book not just describes the present databases, but additionally presents the best way to receive the objective info. that's, simply because many databases supply numerous info which may be bought from diverse views, each one bankruptcy offers clients with capability organic questions that may be responded through a selected database and step by step directions, with figures, on tips on how to receive that info. Troubleshooting suggestions also are supplied to help clients encountering difficulties that may be estimated while utilizing those databases. furthermore, touch details for every database is supplied in case unforeseen matters arise.

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4 Glycan List In GlyTouCan, the entire list of registered glycan structures can be seen from the “Glycan List” option under the “View All” menu. From this view, glycans can be filtered to find a particular glycan structure matching specific conditions. 0: The First International Glycan Structure Repository 55 Fig. 16 Filtering of glycan structure in a Glycan List. The Glycan List displays the entire list of registered glycan structures. This screen can be used to filter by specific conditions such as selected motifs, monosaccharides, and mass 56 D.

There are two ways to draw this structure in GlycanBuilder. 0: The First International Glycan Structure Repository 61 Fig. 22 Structure menu in GlycanBuilder. The structure menu includes templates of glycan structures and residues Fig. 23 Linkage window in GlycanBuilder.

The corresponding search form is found at ! Query Monosaccharide. In the section Query MonosaccharideDB by name, you can enter a residue name and specify the notation scheme that is used to encode the residue (Fig. 1). For example, select CFG notation to define a residue in LinearCode®, enter the monosaccharide name GNb (case sensitive), and press the submit button. This will direct you to the entry page of “-D-GlcpNAc (Fig. ); a list of the 3 Translation and Validation of Carbohydrate Residue Names.

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